JAEGIS GitHub Integration System - File Inventory & Commit Strategy

📁 Complete File Inventory

Core System Files (Priority 1)

📄 jaegis_config.json
   ├── Size: ~15KB
   ├── Type: Configuration
   ├── Dependencies: None
   ├── Description: N.L.D.S. + 7-tier architecture configuration
   └── Commit: "feat: core config - Add N.L.D.S. and 7-tier architecture configuration"

📄 GOLD.md
   ├── Size: ~25KB
   ├── Type: Documentation
   ├── Dependencies: jaegis_config.json
   ├── Description: Master guidelines with N.L.D.S. integration
   └── Commit: "feat: master guidelines - Add GOLD.md with N.L.D.S. integration"

📄 jaegis_github_integration_system.py
   ├── Size: ~20KB
   ├── Type: Python Module
   ├── Dependencies: core.brain_protocol.agent_creator
   ├── Description: Agent Creator specialization for GitHub integration
   └── Commit: "feat: agent creator - Add GitHub integration Agent Creator specialization"

Core Brain Protocol (Priority 2)

📁 core/brain_protocol/
   ├── 📄 __init__.py (Package initialization)
   ├── 📄 agent_creator.py (~15KB - Base Agent Creator system)
   ├── Dependencies: None (base system)
   ├── Description: Foundation Agent Creator and brain protocol
   └── Commit: "feat: core system - Add base Agent Creator and brain protocol foundation"

GitHub Integration Module (Priority 3)

📁 github_integration/
   ├── 📄 __init__.py
   │   ├── Size: ~1KB
   │   ├── Type: Package Init
   │   ├── Dependencies: None
   │   └── Description: GitHub integration package initialization
   │
   ├── 📄 github_fetcher.py
   │   ├── Size: ~18KB
   │   ├── Type: Python Module
   │   ├── Dependencies: aiohttp, asyncio, json, logging
   │   ├── Description: Single link + multi-fetch system with caching
   │   └── Commit: "feat: github fetcher - Add single link + multi-fetch system"
   │
   ├── 📄 amasiap_protocol.py
   │   ├── Size: ~22KB
   │   ├── Type: Python Module
   │   ├── Dependencies: asyncio, logging, json, datetime
   │   ├── Description: Always Modify And Send Input Automatically Protocol
   │   ├── Note: Contains mock web_search - needs production replacement
   │   └── Commit: "feat: amasiap protocol - Add A.M.A.S.I.A.P. Protocol implementation"
   │
   ├── 📄 squad_coordinator.py
   │   ├── Size: ~16KB
   │   ├── Type: Python Module
   │   ├── Dependencies: jaegis_github_integration_system, core.brain_protocol
   │   ├── Description: Agent squad coordination and management
   │   └── Commit: "feat: squad coordinator - Add agent squad coordination system"
   │
   └── 📄 integration_orchestrator.py
       ├── Size: ~20KB
       ├── Type: Python Module
       ├── Dependencies: All github_integration modules, jaegis_github_integration_system
       ├── Description: Main orchestration system coordinating all components
       └── Commit: "feat: integration orchestrator - Add main system orchestration"

Documentation Suite (Priority 4)

📁 docs/
   ├── 📄 USER_GUIDELINES.md
   │   ├── Size: ~8KB
   │   ├── Type: Documentation
   │   ├── Description: N.L.D.S. enhanced user interface guide
   │   └── Commit: "docs: user guidelines - Add N.L.D.S. enhanced interface guide"
   │
   ├── 📄 JAEGIS_GITHUB_INTEGRATION_SYSTEM_DOCUMENTATION.md
   │   ├── Size: ~35KB
   │   ├── Type: Technical Documentation
   │   ├── Description: Comprehensive technical specifications
   │   └── Commit: "docs: technical specs - Add comprehensive technical documentation"
   │
   ├── 📄 IMPLEMENTATION_SUMMARY.md
   │   ├── Size: ~12KB
   │   ├── Type: Project Documentation
   │   ├── Description: Complete project summary and achievements
   │   └── Commit: "docs: implementation - Add project summary and achievements"
   │
   └── 📄 API_REFERENCE.md (To be generated)
       ├── Size: ~25KB (estimated)
       ├── Type: API Documentation
       ├── Description: Auto-generated API documentation
       └── Commit: "docs: api reference - Add comprehensive API documentation"

Demonstration & Testing (Priority 5)

📁 demos/
   ├── 📄 simple_github_integration_demo.py
   │   ├── Size: ~15KB
   │   ├── Type: Python Script
   │   ├── Dependencies: All github_integration modules
   │   ├── Description: Working demonstration script with all components
   │   └── Commit: "demo: simple demo - Add working demonstration script"
   │
   ├── 📄 github_integration_demo.py
   │   ├── Size: ~18KB
   │   ├── Type: Python Script
   │   ├── Dependencies: All github_integration modules
   │   ├── Description: Advanced demonstration with detailed output
   │   └── Commit: "demo: advanced demo - Add detailed demonstration script"
   │
   └── 📁 results/
       └── 📄 github_integration_demo_summary.json
           ├── Size: ~5KB
           ├── Type: JSON Data
           ├── Description: Demonstration execution results
           └── Commit: "demo: results - Add demonstration execution results"

📁 tests/
   └── 📄 test_github_integration_system.py
       ├── Size: ~20KB
       ├── Type: Python Test Suite
       ├── Dependencies: All system modules, unittest/pytest
       ├── Description: Comprehensive test suite for all components
       └── Commit: "test: comprehensive suite - Add complete system test coverage"

Repository Infrastructure (Priority 6)

📄 README.md (To be created)
   ├── Size: ~8KB (estimated)
   ├── Type: Repository Documentation
   ├── Description: System overview, quick start, navigation
   └── Commit: "docs: readme - Add comprehensive repository overview and quick start"

📄 .gitignore (To be created)
   ├── Size: ~2KB (estimated)
   ├── Type: Git Configuration
   ├── Description: Python + system exclusions
   └── Commit: "config: gitignore - Add comprehensive exclusion patterns"

📄 requirements.txt (To be created)
   ├── Size: ~1KB (estimated)
   ├── Type: Python Dependencies
   ├── Description: Required Python packages
   └── Commit: "config: requirements - Add Python dependency specifications"

---

🔄 Detailed Commit Strategy

Commit Group 1: Repository Foundation

# Commit 1.1: Initial repository setup
git add README.md .gitignore requirements.txt
git commit -m "feat: repository setup - Initialize JAEGIS GitHub Integration System repository

- Add comprehensive README with system overview and quick start guide
- Configure .gitignore for Python development and system exclusions  
- Define Python dependencies in requirements.txt
- Establish repository structure and navigation

Repository: https://github.com/usemanusai/JAEGIS
System: JAEGIS v2.2 Phase 5 with N.L.D.S. integration"

Commit Group 2: Core Configuration

# Commit 2.1: Master configuration
git add jaegis_config.json
git commit -m "feat: core config - Add N.L.D.S. and 7-tier architecture configuration

- Configure Natural Language Detection System (N.L.D.S.) as Tier 0
- Define 7-tier agent architecture with 128+ agents
- Set automatic mode selection with 85% confidence threshold
- Configure GitHub integration endpoints and resource fetching
- Enable A.M.A.S.I.A.P. Protocol with research enhancement settings

Features: N.L.D.S., 7-tier architecture, automatic mode selection"

# Commit 2.2: Master guidelines
git add GOLD.md
git commit -m "feat: master guidelines - Add GOLD.md with N.L.D.S. integration and 7-tier architecture

- Document complete JAEGIS Method with N.L.D.S. as primary interface
- Define automatic mode selection eliminating manual selection in 85%+ cases
- Specify 7-tier architecture from N.L.D.S. (Tier 0) to maintenance squads (Tier 6)
- Include natural language command translation and GitHub integration usage
- Provide comprehensive operational workflows and quick start guide

Components: N.L.D.S., automatic mode selection, 128+ agents, GitHub integration"

Commit Group 3: Agent Creator System

# Commit 3.1: Core brain protocol
git add core/
git commit -m "feat: core system - Add base Agent Creator and brain protocol foundation

- Implement foundational Agent Creator system for specialized agent design
- Define agent profiles, squad definitions, and gap analysis capabilities
- Establish brain protocol architecture for agent coordination
- Provide base classes for agent specialization and squad management

Foundation: Agent creation, squad design, gap analysis, brain protocol"

# Commit 3.2: GitHub integration Agent Creator
git add jaegis_github_integration_system.py
git commit -m "feat: agent creator - Add GitHub integration Agent Creator specialization

- Specialize Agent Creator for GitHub integration requirements
- Implement gap analysis for GitHub fetching, multi-fetch, and A.M.A.S.I.A.P. Protocol
- Design 6 specialized agents across 3 tiers for GitHub operations
- Create 4 coordinated squads for comprehensive GitHub integration
- Deploy complete GitHub integration agent ecosystem

Agents: 6 specialized, Squads: 4 coordinated, Capabilities: GitHub integration"

Commit Group 4: GitHub Integration Module

# Commit 4.1: GitHub integration package
git add github_integration/__init__.py
git commit -m "feat: github integration - Initialize GitHub integration package structure

- Establish github_integration package for modular GitHub operations
- Define package exports and module organization
- Prepare for specialized GitHub integration components

Package: github_integration module structure"

# Commit 4.2: GitHub fetcher
git add github_integration/github_fetcher.py
git commit -m "feat: github fetcher - Add single link + multi-fetch system with caching

- Implement single GitHub link fetching with fallback support
- Add automatic multi-fetch discovery from fetched content
- Include intelligent caching with TTL and performance optimization
- Provide comprehensive error handling and retry mechanisms
- Support multiple GitHub URL formats and content types

Features: Single fetch, multi-fetch discovery, caching, error handling"

# Commit 4.3: A.M.A.S.I.A.P. Protocol
git add github_integration/amasiap_protocol.py
git commit -m "feat: amasiap protocol - Add Always Modify And Send Input Automatically Protocol

- Implement automatic input enhancement with 15-20 research queries
- Generate comprehensive task breakdown with phases and sub-phases
- Perform gap analysis and implementation strategy development
- Integrate current date context (July 27, 2025) for research enhancement
- Provide systematic task hierarchy and execution planning

Protocol: A.M.A.S.I.A.P., Research: 15-20 queries, Task phases: 5-8"

# Commit 4.4: Squad coordinator
git add github_integration/squad_coordinator.py
git commit -m "feat: squad coordinator - Add agent squad coordination and management

- Coordinate GitHub integration agent squads for optimal performance
- Implement 4 coordination protocols for specialized operations
- Manage squad operations with performance monitoring and tracking
- Provide cross-squad communication and task distribution
- Enable real-time coordination status and metrics

Squads: 4 specialized, Protocols: 4 coordination, Monitoring: Real-time"

# Commit 4.5: Integration orchestrator
git add github_integration/integration_orchestrator.py
git commit -m "feat: integration orchestrator - Add main system orchestration and coordination

- Orchestrate complete GitHub integration workflow
- Coordinate GitHub fetching, A.M.A.S.I.A.P. Protocol, and squad operations
- Provide unified API for complete integration processing
- Implement comprehensive error handling and graceful degradation
- Enable system status monitoring and performance metrics

Integration: Complete workflow, API: Unified, Monitoring: Comprehensive"

Commit Group 5: Documentation Suite

# Commit 5.1: Documentation structure
git add docs/
git commit -m "docs: documentation suite - Add comprehensive documentation structure

- Create organized documentation directory with proper navigation
- Include user guidelines with N.L.D.S. enhanced interface examples
- Provide technical specifications and implementation details
- Document complete project summary and achievements
- Establish API reference and technical documentation

Documentation: Complete suite, Navigation: Organized, Coverage: Comprehensive"

Commit Group 6: Demonstration & Testing

# Commit 6.1: Demonstration scripts
git add demos/
git commit -m "demo: demonstration suite - Add working demonstration scripts and results

- Provide simple demonstration script with all components working
- Include advanced demonstration with detailed output and metrics
- Add demonstration execution results and performance data
- Enable complete system validation through working examples

Demos: 2 scripts, Results: Included, Validation: Complete system"

# Commit 6.2: Test suite
git add tests/
git commit -m "test: comprehensive suite - Add complete system test coverage

- Implement comprehensive test suite for all system components
- Test Agent Creator system, GitHub integration, and A.M.A.S.I.A.P. Protocol
- Validate squad coordination and integration orchestration
- Provide end-to-end system testing and validation
- Enable continuous integration and quality assurance

Tests: Comprehensive, Coverage: All components, Validation: End-to-end"

---

📊 Upload Sequence & Dependencies

Phase 1: Foundation (Commits 1.1)

• Repository setup files

• No dependencies

• Estimated time: 15 minutes

Phase 2: Core Configuration (Commits 2.1-2.2)

• Configuration and guidelines

• Dependencies: Repository foundation

• Estimated time: 30 minutes

Phase 3: Agent Systems (Commits 3.1-3.2)

• Core brain protocol and Agent Creator

• Dependencies: Core configuration

• Estimated time: 45 minutes

Phase 4: GitHub Integration (Commits 4.1-4.5)

• Complete GitHub integration module

• Dependencies: Agent systems

• Estimated time: 1.5 hours

Phase 5: Documentation (Commit 5.1)

• Complete documentation suite

• Dependencies: GitHub integration

• Estimated time: 30 minutes

Phase 6: Validation (Commits 6.1-6.2)

• Demonstrations and testing

• Dependencies: Documentation

• Estimated time: 45 minutes

Total Estimated Deployment Time: 4 hours

---

✅ Validation Checklist

Pre-Upload Validation

• All files exist and are accessible

• No personal paths or sensitive information

• Python syntax validation passed

• Import dependencies mapped correctly

• File sizes within GitHub limits

Post-Upload Validation

• All files uploaded successfully

• Repository structure matches plan

• Import statements work correctly

• Documentation renders properly

• Demonstration scripts execute

• Test suite runs successfully

Integration Validation

• Complete system functionality verified

• All components work together

• GitHub integration operational

• N.L.D.S. simulation successful

• A.M.A.S.I.A.P. Protocol functional

---

Note: This is a planning document. Execute systematically using GitHub MCP Server tools with proper validation at each step.