JAEGIS Project Critical System Files Analysis

Task 1.4: Identify Critical System Files

Date: 2025-01-23 Purpose: Identify files that are critical to system functionality and require special handling during reorganization

Critical System Files Classification

🚨 TIER 1: SYSTEM CORE (DO NOT MOVE)

JAEGIS-agent/agent-config.txt

Criticality: MAXIMUM
Function: Core agent configuration and system orchestration
Dependencies: All 24 agents, entire JAEGIS system
Impact if broken: Complete system failure
Special handling: DO NOT MOVE - Keep in JAEGIS-agent/
References: 200+ internal file references
Risk level: CRITICAL

JAEGIS-agent/ Core Directories

JAEGIS-agent/personas/: Agent personality definitions
JAEGIS-agent/tasks/: Task execution frameworks
JAEGIS-agent/templates/: Document generation templates
JAEGIS-agent/checklists/: Quality assurance frameworks
JAEGIS-agent/data/: Knowledge bases and data sources

Criticality: MAXIMUM
Function: Core agent functionality
Impact if moved: Complete agent system failure
Special handling: KEEP ENTIRE STRUCTURE IN PLACE
Risk level: CRITICAL

🔥 TIER 2: SYSTEM CRITICAL (SPECIAL HANDLING REQUIRED)

package.json

Current location: root/package.json
Proposed location: config/build/package.json
Criticality: CRITICAL
Function: NPM package management, build scripts, extension configuration
Dependencies: Node.js, NPM, build system, VS Code extension system
Impact if broken: Build failure, extension won't load, development broken
Special handling required:
  - Update NPM/Node.js references
  - Update build script paths
  - Update VS Code extension paths
  - Test thoroughly before finalizing
Risk level: HIGH

tsconfig.json

Current location: root/tsconfig.json
Proposed location: config/build/tsconfig.json
Criticality: CRITICAL
Function: TypeScript compilation configuration
Dependencies: TypeScript compiler, build system, source files
Impact if broken: TypeScript compilation failure, build broken
Special handling required:
  - Update TypeScript compiler references
  - Update source file paths
  - Update output paths
  - Coordinate with package.json updates
Risk level: HIGH

webpack.config.js

Current location: root/webpack.config.js
Proposed location: config/build/webpack.config.js
Criticality: CRITICAL
Function: Build system configuration, bundling, optimization
Dependencies: Webpack, build scripts, source files, output directories
Impact if broken: Build system failure, extension packaging broken
Special handling required:
  - Update entry point paths
  - Update output directory paths
  - Update asset paths
  - Update loader configurations
Risk level: HIGH

⚡ TIER 3: SYSTEM IMPORTANT (CAREFUL HANDLING)

enhanced-JAEGIS-orchestrator-instructions.md

Current location: JAEGIS-agent/enhanced-JAEGIS-orchestrator-instructions.md
Proposed location: docs/user-guides/enhanced-JAEGIS-orchestrator-instructions.md
Criticality: HIGH
Function: Primary user instructions and system documentation
Dependencies: User interface systems, documentation references
Impact if broken: User confusion, system unusable for new users
Special handling required:
  - Update all references to this file
  - Update internal cross-references
  - Test user interface integration
Risk level: MEDIUM

JAEGIS-user-guidelines-condensed.md

Current location: JAEGIS-agent/JAEGIS-user-guidelines-condensed.md
Proposed location: docs/user-guides/JAEGIS-user-guidelines-condensed.md
Criticality: HIGH
Function: Primary user interface guidelines (24,576 char limit compliant)
Dependencies: User interface systems, AI agent orchestrator
Impact if broken: User interface broken, system unusable
Special handling required:
  - Update user interface references
  - Maintain character limit compliance
  - Test with user interface systems
Risk level: MEDIUM

Build Scripts

Files:
  - build-and-test-integration.ps1
  - build-integration.bat
  - build-integration.js
  - build-web-agent.js

Current location: root/
Proposed location: scripts/build/
Criticality: HIGH
Function: Build automation, testing, integration
Dependencies: Configuration files, source code, build tools
Impact if broken: Development workflow broken, CI/CD failure
Special handling required:
  - Update configuration file references
  - Update output path references
  - Update script cross-references
  - Test build processes thoroughly
Risk level: MEDIUM

📋 TIER 4: SYSTEM SUPPORTING (STANDARD HANDLING)

Installation Scripts

Files: install-*.ps1/sh/bat, setup-*.ps1/sh/bat
Criticality: MEDIUM
Function: System installation and setup
Impact if broken: Installation issues, setup problems
Special handling: Update documentation references
Risk level: LOW

Service Scripts

Files: emad-*.py, service management scripts
Criticality: MEDIUM
Function: Background services, automation
Impact if broken: Service functionality reduced
Special handling: Update configuration references
Risk level: LOW

Documentation Files

Files: 24-agent-*.md, deployment-*.md, various documentation
Criticality: MEDIUM
Function: System documentation, user guidance
Impact if broken: Documentation navigation issues
Special handling: Update cross-references
Risk level: LOW

Special Handling Procedures

Tier 1 Files: DO NOT MOVE

Procedure:
  1. Leave all files in current locations
  2. No path updates required
  3. Verify integrity after other moves
  4. Test core functionality

Files:
  - JAEGIS-agent/agent-config.txt
  - JAEGIS-agent/personas/
  - JAEGIS-agent/tasks/
  - JAEGIS-agent/templates/
  - JAEGIS-agent/checklists/
  - JAEGIS-agent/data/

Tier 2 Files: Critical Path Updates

Procedure:
  1. Create comprehensive backup
  2. Copy files to new locations
  3. Update all path references systematically
  4. Test functionality at each step
  5. Validate build processes
  6. Only remove originals after full validation

Files:
  - package.json → config/build/
  - tsconfig.json → config/build/
  - webpack.config.js → config/build/

Tier 3 Files: Important Path Updates

Procedure:
  1. Copy files to new locations
  2. Update references in other files
  3. Test user interface integration
  4. Validate documentation access
  5. Remove originals after validation

Files:
  - enhanced-JAEGIS-orchestrator-instructions.md → docs/user-guides/
  - JAEGIS-user-guidelines-condensed.md → docs/user-guides/
  - Build scripts → scripts/build/

Tier 4 Files: Standard Handling

Procedure:
  1. Copy files to new locations
  2. Update basic references
  3. Test functionality
  4. Remove originals

Files:
  - Installation scripts → scripts/installation/
  - Service scripts → scripts/services/
  - Documentation → docs/[category]/

Risk Mitigation Strategies

For Tier 1 Files (Core System)

Strategy: PRESERVATION
- Keep all files in original locations
- No changes to file paths or references
- Verify integrity after reorganization
- Monitor for any unexpected issues

For Tier 2 Files (Critical)

Strategy: CAREFUL MIGRATION
- Create multiple backups before changes
- Update paths in small, testable increments
- Test build system after each change
- Maintain rollback capability
- Validate with multiple test scenarios

For Tier 3 Files (Important)

Strategy: SYSTEMATIC MIGRATION
- Copy first, update references, then remove
- Test user-facing functionality
- Validate documentation accessibility
- Check cross-reference integrity

For Tier 4 Files (Supporting)

Strategy: STANDARD MIGRATION
- Standard copy-update-remove process
- Basic functionality testing
- Reference validation

Validation Requirements by Tier

Tier 1 Validation

Tests required:
  - Agent loading functionality
  - Agent activation and persona switching
  - Task execution framework
  - Template and checklist access
  - Data source accessibility
Success criteria: 100% core functionality preserved

Tier 2 Validation

Tests required:
  - NPM package installation
  - TypeScript compilation
  - Webpack bundling
  - Extension packaging
  - Build script execution
Success criteria: All build processes work perfectly

Tier 3 Validation

Tests required:
  - User interface access to guidelines
  - Documentation navigation
  - Build script execution
  - Cross-reference integrity
Success criteria: All user-facing features work

Tier 4 Validation

Tests required:
  - Installation script execution
  - Service script functionality
  - Documentation accessibility
Success criteria: All supporting features work

Emergency Rollback Plan

Rollback Triggers

Tier 1: Any core system functionality failure
Tier 2: Build system failure or extension loading failure
Tier 3: User interface broken or major documentation issues
Tier 4: Multiple supporting feature failures

Rollback Procedure

1. Stop all reorganization activities
2. Restore files from backup to original locations
3. Verify system functionality
4. Analyze failure cause
5. Revise reorganization plan
6. Resume with corrected approach

Success Criteria

Overall Success

- All Tier 1 files remain functional in original locations
- All Tier 2 files work perfectly in new locations
- All Tier 3 files accessible and functional in new locations
- All Tier 4 files properly organized and functional
- Zero functionality loss
- Improved organization and maintainability

Next Steps

1. Complete risk assessment (Task 1.5)

2. Create detailed backup strategy (Phase 2)

3. Begin with Tier 4 files (lowest risk)

4. Progress through tiers systematically

Status: ✅ TASK 1.4 COMPLETE - Critical system files identified with special handling procedures defined